rs50867089 SNP Detail

Summary

• ID
  rs50867089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGGCAAT TTTTGACAGT
  CTCTACGGAG ACTGAATAAT TGTGGTTTAA AAAAAGCATG CTACTTTTTA GAGATTGTTA
  TAGAATCCTA GTTTACTTTT GTTAAGATAA TTTCATTTTT CAGCTTTTCC TACCGTCTTC
  CTATGTGTTA GTTTTCTATT TCCTTGACAA GGTTTCCTTT TTCTCCTGCT ATACTGAGAA
  R
  TCTGTTATCC CTGGCTGCAG CAATCCTGTC TCCGCCTCCG GTCTCCTCAA ACTTGTATCA
  GTGACTGGCC CAACACTCAG CAAATCCTCC TGTCTCCGCC TCCGGAGTGC TAGGTTTACA
  GACCTCTAAA CCACCACCCC GAGGTCAGCC TCTGCTTCGG ACCGTCACGA CACATGTCCT
  TTCATCCCTT CTGGCTTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60828968	NES16028191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50867089					SNP	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60828968	NES16028191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	52 bp proximal
Gm24265	predicted gene, 24265	170 bp downstream
Gm24407	predicted gene, 24407	485 bp upstream
Gm57305	predicted gene, 57305	within coordinates
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1428 bp distal
Rr124163	regulatory region 124163	within coordinates
Rr124164	regulatory region 124164	1972 bp proximal
Tssr48292	transcription start site region 48292	447 bp downstream
Tssr48293	transcription start site region 48293	311 bp downstream
Tssr48294	transcription start site region 48294	235 bp downstream
Tssr48295	transcription start site region 48295	462 bp upstream
Tssr48296	transcription start site region 48296	557 bp upstream
Tssr52808	transcription start site region 52808	837 bp upstream
Tssr52809	transcription start site region 52809	820 bp upstream
Tssr52810	transcription start site region 52810	186 bp upstream
Tssr52811	transcription start site region 52811	61 bp downstream
Tssr52812	transcription start site region 52812	174 bp downstream
Tssr52813	transcription start site region 52813	186 bp downstream
Tssr52814	transcription start site region 52814	222 bp downstream
Tssr52815	transcription start site region 52815	416 bp downstream
Tssr52816	transcription start site region 52816	575 bp downstream