rs50868574 SNP Detail

Summary

• ID
  rs50868574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGAAATATAT TTGTACTTAA TATTGTTTTA AAATTGCACA
  TATGATATTA AGGGCAGCAG ACATTTTATG ACCATGCACT GTGTGTCTAG CATAATCCTA
  R
  GTGCAGGGTC ATGGTAGGTG TGGAGTTGGA TGCATCCTTG TCCCTCCTGG AGCTCTCCGG
  CATACATAAT GCCATGCAGT TGGGCAAGGT GATAAAATAT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132717862	ENSMUSSNP4061400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50868574					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944777 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1836 bp downstream
Tssr104895	transcription start site region 104895	1686 bp downstream
Tssr104896	transcription start site region 104896	1659 bp downstream