rs50869668 SNP Detail

Summary

• ID
  rs50869668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109556584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCCGGA CAGTTAGGAC
  AGTTAGGGTT ACACAGTCTT GGCTGGTTCT GGGACGCTGA TAGTTGGCTA GTTCTTTAGC
  ACAGATGATG TTGCTGGTTG ATGAAGTTGT GGCCCTTCAC AAGTGGGTTC CCCTTGGGTT
  AGGAGTAGCA AGAGGGTGTG CTGGATCTGA GCGAAGCTGG CCGAGGCACA AGGGAAAATG
  R
  CAGTGACTTG GTGTGTTTTC AGTCAAGTTC ATCATCTGAG TCTGATAGCT CTTCTAGCCT
  TGCCTGTTCC CTGGCTGGGG AAGGCAGCGC CATTCTGGAG GCCATGGCCA GGAATCGTGT
  GAGGGCCTGG GCCACCTGAT CTCTGCTAAG CAGAGTAAGG CGGCCATCGG TGCCCAGGGT
  GTAGAGTAGC CGGTTGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61717611	NES17648365	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50869668					SNP	A	A	A	A	A	A	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717611	NES17648365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109556584 () rs orientation: forward

Symbol	Name	Function Class
6430411K18Rik	RIKEN cDNA 6430411K18 gen	1387 bp upstream
Mir431	microRNA 431	297 bp upstream
Mir433	microRNA 433	1565 bp upstream
Mir3070b	microRNA 3070b	1470 bp downstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115133	transcription start site region 115133	373 bp upstream
Tssr115134	transcription start site region 115134	750 bp upstream