rs50869955 SNP Detail

Summary

• ID
  rs50869955
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAAGTTCATT TTGTTGCAAT ATTTAACCTG AAATCACTTG
  ATAGGGTATG TGACTTGAGC CTTCGTTTGT TTTGCCGGCG TTGAAACCAT CTCATTAAGG
  S
  CTCTGTCCAT AGTAAGTTGT AACATTCACT AGCGCTCGCA GGTGATCTAT CTAAAGTGTA
  CACTTCAAAG GTTTTGTTTT AGTGTTTTTG TAGACGGTGC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535307	ENSMUSSNP5340893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50869955					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	85 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1026 bp distal
Rr564564	regulatory region 564564	877 bp distal
Rr564565	regulatory region 564565	within coordinates
Rr564566	regulatory region 564566	528 bp distal
Rr564567	regulatory region 564567	218 bp proximal
Rr564568	regulatory region 564568	1965 bp proximal
Tssr20024	transcription start site region 20024	846 bp downstream
Tssr20025	transcription start site region 20025	830 bp downstream
Tssr20026	transcription start site region 20026	679 bp downstream
Zfp661	zinc finger protein 661	1015 bp upstream