rs50871607 SNP Detail

Summary

• ID
  rs50871607
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145409939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTGCCTG GTTGTTGGCC CTTTTTCTGA GAGACCTTGG
  GGGCGGGTGT CCCGTTCAGT TGAGACTGCT GGTATATGGA TGGGGCCACC CTCCTCCTCA
  S
  CTCCTTCTGG CTTTCCCCCA AATCAACCAT AGGGGTCATT GGCTTCCATC CATTGGCTAA
  GTGCTAGAAT CTGCATCTGA CTCAGCTGTT TGTTGGACC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147872844	ENSMUSSNP1875700	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50871607					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145409939 () rs orientation: forward

Symbol	Name	Function Class
Rr398689	regulatory region 398689	1670 bp downstream
Rr398690	regulatory region 398690	1021 bp upstream
Rr398691	regulatory region 398691	1801 bp upstream
Zfp980	zinc finger protein 980	within coordinates