rs50872341 SNP Detail

Summary

• ID
  rs50872341
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992390 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G AATGTTTTTT GGATGTGCCT TATGCACGAC AAACTCCTCA
  AGAGCCACGG GTGTATAAGT GTACTAGTTT TCATTTAAAT CATACACTAT GCTTTGTGCA
  T
  AATGTGGATA AACCTTTTAC ACCCTGTATA TATATATTTT TAAAGAAAAA GATTATCTCT
  AATTGGGCAG ATCAAATTAA TACTGCTGAC ACTATAAGTC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135499891	ENSMUSSNP5259289	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50872341					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992390 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates