rs50872485 SNP Detail

Summary

• ID
  rs50872485
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:86986229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA ATGGAGGCCT GGATGAACAG
  K
  TGTTATGATT TGCCCAGCAC CTACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139889499	ENSMUSSNP5280152	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324692372	CHEV_14_87148600	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50872485					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:86986229 () rs orientation: forward

Symbol	Name	Function Class
Diaph3	diaphanous related formin 3	within coordinates
Gm41224	predicted gene, 41224	1673 bp upstream
Rr297552	regulatory region 297552	within coordinates
Tssr4496	transcription start site region 4496	312 bp downstream
Tssr129931	transcription start site region 129931	275 bp downstream