rs50872780 SNP Detail

Summary

• ID
  rs50872780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25759443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTGATC ATCATCACGC
  TCCACTAGCA CAGAGGTACT TGGAACCAGG ATCATACATA GGGCCTGGAA CTTATGGTAG
  CTTCTAGCGG GGACTGCAGC TCCGGATTGG AACCAGCTGC TGTCACGGGA TCTGTGCGCA
  GTGAAGAAGT CGGTGGGGAA GAGAGACGTG TGGCTATCAT CCGTTCGATA GTCTTTCACT
  S
  GGATAAGTGC AGAAGCTATT TCTTGGCCTG GTTGCCATCA ACAGGACACC AGCCCGTGGC
  TGCTGCCATT CCTCCCAAAG AGAGCTGGTT TTCAAGACAG CTTGCCCTCT CATTGGGCTC
  AACTGTGGGA TTTTGCTCTT TGGTTAAAGG GGTAGTAAAC CTGAAAGGGC TTTCAGCTTC
  AGGTTCCAAC AGATCCTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52193798	NES15225022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50872780					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193798	NES15225022	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25759443 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	128 bp upstream
Gm66740	predicted gene, 66740	569 bp upstream
Rr218979	regulatory region 218979	443 bp distal
Rr218980	regulatory region 218980	within coordinates