rs50873802 SNP Detail

Summary

• ID
  rs50873802
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40556033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCATTTT TACTCCCATA
  TGCAGAATTG GCAGCCATGT TGGTTTAAGT TGGCCAGTGC TCAACAAGTA CGATGCTCTA
  CTCTTGGATG ATCTCTTTGG AATTCCTGAT GCATTTGGGT AATGGTAGAA TGAGATTGTG
  TAGTCTTTTA AAAACAGACA TTGGGAGGCA AGGGCTTGAA GTATGGACTT TTCAGAATGG
  M
  TTTGTTCTTG GCTGGTCTGT GGACAAAAAC AATAATGGTA GCTACCATGA CTGCTGAGAA
  TACTGTATAT TCTGAAGATT TTAGTTGGAA TATTTTATAG ATGTCTAGTA AGCCCACTTG
  AGCTGTGGTA CTGGTTAATG CCCAAGTTTG TTGATGTTTT ATCTGGATTG ATAAAAAATG
  GGATATCCAA ATCATTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721432	NES16360434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50873802					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721432	NES16360434	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40556033 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	within coordinates
Rr410075	regulatory region 410075	1501 bp distal
Rr410076	regulatory region 410076	1390 bp distal
Tssr65	transcription start site region 65	1371 bp downstream
Tssr6477	transcription start site region 6477	1442 bp downstream
Tssr6478	transcription start site region 6478	1415 bp downstream
Tssr6479	transcription start site region 6479	1390 bp downstream
Tssr11438	transcription start site region 11438	1643 bp upstream
Tssr11439	transcription start site region 11439	420 bp upstream
Tssr11440	transcription start site region 11440	399 bp upstream
Tssr11441	transcription start site region 11441	391 bp upstream
Tssr11442	transcription start site region 11442	372 bp upstream
Tssr11443	transcription start site region 11443	344 bp upstream