rs50873993 SNP Detail

Summary

• ID
  rs50873993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34722770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC AAGTTCTGTG GATGAGCTAG
  Y
  TATCTGAGCT CAAAGCTCAC TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63335229	NES17512786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50873993					SNP	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335229	NES17512786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34722770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	1271 bp proximal
Gm57348	predicted gene, 57348	1739 bp upstream
Rr402479	regulatory region 402479	1562 bp upstream
Rr444978	regulatory region 444978	963 bp proximal
Rr444979	regulatory region 444979	1688 bp proximal
Rr444980	regulatory region 444980	1772 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	Intron
Tssr100930	transcription start site region 100930	1776 bp upstream
Tssr100931	transcription start site region 100931	1843 bp upstream
Tssr107398	transcription start site region 107398	1641 bp downstream
Tssr107399	transcription start site region 107399	1660 bp downstream
Tssr107400	transcription start site region 107400	1688 bp downstream