rs50874251 SNP Detail

Summary

• ID
  rs50874251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131993879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTCCC AGGGTCTACC
  AGAAAAGAAG CTGTGATTAC CTGAAAGAAA ACAGCTGTCC ATCAACTGAG CCACCTCCTG
  GAAGCTTCCC AGACTCACAT CCATGATAAT ATCCTAAGGA ACATGACATG TGTTTTCATA
  AAGGAAACAG GAGGATTCCA ATGGTAGGGG TTTTCAAAAT GGAGACATAT TTAAAGTTGT
  Y
  GACTTGGGAC AGTGGTCTGG CTCTTCGGGT AAAAGCACTT GCTACCAGAC CGGATGGTCT
  GAATTTGATC CCTCTGATAC CGACATGGTG AAAGAAAAAG TCAACTCTTC CTGCAAGCTG
  CTCTCTGACC TTTCATCTCT GGGCTACAGC ACAAGTTTCC CCAATACAAA CAGCTACAAT
  AATAAATAGA TAGATAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60842561	NES16009051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50874251					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60842561	NES16009051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131993879 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	33 bp downstream
Rr621728	regulatory region 621728	1118 bp distal
Rr621729	regulatory region 621729	569 bp distal
Tssr53573	transcription start site region 53573	1128 bp upstream
Tssr53574	transcription start site region 53574	309 bp upstream
Tssr53575	transcription start site region 53575	1049 bp downstream