rs50874634 SNP Detail

Summary

• ID
  rs50874634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81341332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGCCT GCTTCTGACA
  GTCGCTCTGG GTGTGGAGCT CTCCACTACT GCTCAGCGCC GTGCTTGTCC TCTTCCCGCC
  ATGATGGTTA CAGACTAACC CTCTGAGTTT CGGAGGTAAA CGAACCAGTG ATAAAACACT
  TCCTTTACCC GAGTTGCTGT GGTCATGGAA TAGATCAGTG ACTGAAGCAC TGTGCCAGCC
  Y
  GATGGTGTAA ACAGTCCGTC CAAACCACCC ATTTCCTCCG CCCAGCCTCT TGAGGCCACA
  GCCTGGTTCT CGAGATGTCT CAGCTAAGAC AGGGCTGGGA CAGCATAGCA GGGCTTTTAG
  AAGCTCTCAG CTGCAATAAA GCCAGTGTCA AATTCCCATA GCAGAGGTCA CCAGAGTTGA
  ATGTGAGTGA CATTTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292370	NES16908586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50874634					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292370	NES16908586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81341332 () rs orientation: forward

Symbol	Name	Function Class
Gm16106	predicted gene 16106	732 bp downstream
Gm56270	predicted gene, 56270	780 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr223625	regulatory region 223625	227 bp distal