rs50875527 SNP Detail

Summary

• ID
  rs50875527
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64834903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCGCAC ATGCGTAAAC
  TAGATAGATA GATGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT
  AGATAGATCG ATAGATAGAT AGATCACATA TTCTAAGGCA CTTGTATAAA ATTATGGAAA
  CCACCATATA AATGTTCTTT CTGGGTTATG TATAGAAGGG CGATTTTACT AGATTCTGCT
  M
  TTCATGCTTC AGTGACACTA TAACACTATC ACATTATTTC TCTCAAAGTG CTTAAGTTAA
  AAGTTTGAAG ACAAGGAAGA CTTCTCTGTA GACAGCAAAG ATCCGAATAT TTCACATTGT
  TCATTGGCAG TGAACTTGAG AGATATCTGG CATCTCTTAA ACTTCATTTG GACACAGTGC
  CTTGGGCCTT CCTGTAACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635080	NES17583660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50875527					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635080	NES17583660	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64834903 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	1128 bp downstream
Gm59451	predicted gene, 59451	within coordinates