rs50876362 SNP Detail

Summary

• ID
  rs50876362
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:67018211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCCCG AAGAAAAAAG
  ATCCACTTGC CTGTTACACG ATCTCACAGT GCTGTGGGAT CTTCTTGGGT TTTTCTTCCC
  TGTCCCTCTC CCAGCCTCTT GTGATCATCT TCCAGCTTCT GTTCCCAATC TTCCTGGCTT
  CCTTCCCCAG CAAGGTCACA ATTGCAAACA GGTGGGAGAA ATTCTGAAAG CAGTTCCACT
  S
  GTCCTGGGAA TGCATCCCCG GGACATAGTA CAAACGAAGG AAAATGCTCA CAACATCACA
  GGGCTGGTAA CAGTAACCAG CGTGATCATA TGTATTGATG TGCATGACAC ACAAGTACGC
  AGCAATAGAG GGATGGAAAC TTCCAAGTTC TACTGTTGTT TGCTAGAATA TTACACAACC
  ACCATGCAGT GCAATGATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63541927	NES17020650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50876362					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63541927	NES17020650	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:67018211 () rs orientation: forward

Symbol	Name	Function Class
Gm63615	predicted gene, 63615	within coordinates
Rr404420	regulatory region 404420	664 bp downstream
St3gal1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	within coordinates
Tssr134620	transcription start site region 134620	91 bp downstream