rs50877493 SNP Detail

Summary

• ID
  rs50877493
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93224877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGACCT TTTCCCCTTG
  ATCACTAATT GAGAAAATGC CTTACAGTTG TATCTCATGG AGGCATTTCC TCAACTGAAG
  CTCCTTTCTC TGTGATAACT CCAGCTGTGT CAAGTTGACA CAAAACTAGC CAGTACAGTG
  CTTGTGCTTG GTCCACTTTA TAGAACTCAG GACCCCCTGC CTCAGTAATG CTTGCACTCA
  S
  AGTGGGATGG GTCTTCCCAC TTTATTTAAC TTAATTAAGA CAATCCCCCA TAGACCAACT
  CAGTGTAGAT AACTTCTCAC TGAGACTCTT TCCAGGAGAG TCTAAGTTGT GTCAGGTTGA
  TAAGTCAGCA TATAGCCACC ACACGTGGAC AATCAAGAAT TCAAATGTTC ATTTAATGGT
  AACACAACTC AAAGCCATGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148843991	ENSMUSSNP5653568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321614318	CHEV_5_93506044	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50877493					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93224877 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	156 bp downstream