rs50877682 SNP Detail

Summary

• ID
  rs50877682
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90980319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT TGCTTGCCCG CTTGGCTTTA
  M
  GTTTAAATCA GGGGTGCTCC TGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144937864	ENSMUSSNP4105828	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50877682					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90980319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	within coordinates
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	919 bp distal
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	164 bp upstream
Tssr8032	transcription start site region 8032	577 bp upstream
Tssr8033	transcription start site region 8033	825 bp upstream
Tssr8034	transcription start site region 8034	925 bp upstream
Tssr8035	transcription start site region 8035	948 bp upstream
Tssr8036	transcription start site region 8036	954 bp upstream
Tssr8037	transcription start site region 8037	1376 bp upstream
Tssr12924	transcription start site region 12924	219 bp downstream
Tssr12925	transcription start site region 12925	237 bp downstream
Tssr12926	transcription start site region 12926	257 bp downstream
Tssr12927	transcription start site region 12927	290 bp downstream
Tssr12928	transcription start site region 12928	440 bp downstream
Tssr12929	transcription start site region 12929	1249 bp downstream