rs50878700 SNP Detail

Summary

• ID
  rs50878700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4782608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGAGT CTTGTACAAA
  CTACTACTAG AGAAATGTTT TTGATCTCAT GGTTACAGTT TATCAGCTAT ACTGAGGCAC
  AGGTAGTCAC TGCGAGAGAT GGCAAAATGA GTGGTGAGTG GATGGGTACT AGAAACTTAG
  ACAAAGCCGC ATTCAGAGAA GGGGGTGTCT ATCCAGGAAA GAGCCAAACA CACCAGTTCA
  R
  TGACTGCAGC AATACCCACA TACCGTGTTC AACAGGTGAC TACCATTGGT TCAGAATTCA
  CAGGCCCTTA AGGGATGGCG ACACCAAAAT CAGCTCACAT ATATTCCCAG AAGCCTCCTC
  AAGAGGGAAA TGGGATAGCT CTGAACACAG GACAGTTACA TGAACTGCAA AAAATCTCTT
  TGTAGACCAC CCATGCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964366	NES16161871	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50878700					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964366	NES16161871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4782608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18251	CpG island 18251	1928 bp distal
Il11	interleukin 11	within coordinates
Rr642034	regulatory region 642034	1481 bp distal
Tssr70541	transcription start site region 70541	1465 bp upstream