rs50879359 SNP Detail

Summary

• ID
  rs50879359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31215087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATTTCT AACCTTCACA
  TCAGCTTTAA CTAAGCAGAA AGCATTAGGG GGCTGGAGAG ACGGCTCAGT GGTTAGGAGA
  ACACATGTTC AATTCCCTGC ATTCATATGG CCACCTACAA CTGCCTGTAA TTCCAGTTCT
  GGTGGCCCTG ACACCCTCTT CTGACTTCCA CAGACACTAG ACATGCATAT GGTACATAGA
  Y
  ATACATGCAA GCAAAACACC CATATGCATA ATAAAATAAA CAAATCTAAA AAGAAAACCT
  TAAAGCTCTG TTTTCTATTA AACAGCCCAG ACATTGCTAA ACATACTTGA AACAAATCAG
  AACTCTCCAT AGGTACATTC TGACAGACGT CCTAATTTTC TTTAGGGTAG CTCAGTCAGT
  AAAGTGCTTG CCACACAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52709816	NES15559249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50879359					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709816	NES15559249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31215087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	1293 bp proximal
Eaf1	ELL associated factor 1	1949 bp upstream
Gm63056	predicted gene, 63056	1022 bp downstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Rr296978	regulatory region 296978	313 bp proximal
Tssr124943	transcription start site region 124943	1218 bp upstream
Tssr124944	transcription start site region 124944	1935 bp upstream
Tssr124945	transcription start site region 124945	1967 bp upstream
Tssr127965	transcription start site region 127965	1127 bp downstream
Tssr127966	transcription start site region 127966	1830 bp downstream
Tssr127967	transcription start site region 127967	1862 bp downstream