rs50880425 SNP Detail

Summary

• ID
  rs50880425
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87750163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGGTAA GGTGATATAC
  GCTAAGATGG AGACCATGTA CAAGTGGAAT GCCTGCACCA AGTAACTGTT AGACAAGGAT
  TAACATCGTC TGTCATAATT GTATCTAATA TCAAAAGTTA CAAGTCCTGG AATTCTACAA
  TGGTCCAAAT ACAGACTCCT TAGTGGGACC TATTTGAAAT TCTCAGCAGC AATTATAAAT
  K
  AAAGAGAAAT GCATTGAAAC TAGACATACT TGGTTTAGCT GTAGGAATGT TTAGATGTTT
  CTGATGATCA AAACACAAGG CATCCTTTGT CCAAGCCTTT ATTATAACGC AACCCCAGGA
  AGACCATCTG TGCCATAAGA AACAGGTAAA ACATCTGACA CATGTTGGCT ACTTGATACA
  CTTATAAAAT GAATGAATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301457	NES16910430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50880425					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301457	NES16910430	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87750163 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	679 bp downstream
Tssr95089	transcription start site region 95089	662 bp downstream
Tssr95090	transcription start site region 95090	639 bp downstream
Tssr95091	transcription start site region 95091	617 bp downstream
Tssr95092	transcription start site region 95092	599 bp downstream
Tssr95093	transcription start site region 95093	565 bp downstream
Tssr95094	transcription start site region 95094	540 bp downstream
Tssr95095	transcription start site region 95095	532 bp downstream
Tssr95096	transcription start site region 95096	75 bp upstream
Tssr95097	transcription start site region 95097	91 bp upstream
Tssr95098	transcription start site region 95098	223 bp upstream
Tssr95099	transcription start site region 95099	986 bp upstream
Tssr95100	transcription start site region 95100	2000 bp upstream
Tssr98816	transcription start site region 98816	1020 bp downstream