rs50881982 SNP Detail

Summary

• ID
  rs50881982
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGATCTTG TGTGTGTGTT
  AGTGTACACA TACGAAAGCA TACGTGTGGG TATCAGAGGA TAACTTAGGA AAATTGAGTC
  TCTCCTTCTA GCTCCAAGAG CTTAAATTCA GGTCTTCAAG CTTGGCAGCA ACTTTATCAG
  ATAAATCATG TCACTGAGTT CTTTTGTCTT GGTATATAAA TCATGTTAGC CTGGAACTTA
  M
  TATGTAGCCC AGTCTCATCT TAAATTCATG ACCTATATGA AGGGTTTTTA AAGTGAATAT
  ACATCATGAA TCATTTTATG CACATCCCCA GGCAAAAGCC ACACTATGGT GCTGCCATAA
  TTAATTCCTC AATTAGGAAT GACAATTGGT AATGTAAGGA AAAGTGAGAG GTTCCTATCC
  ACAGTAGAGG TCCACCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148808305	ENSMUSSNP1002069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		A
ss324291487	CHEV_13_23851126	CHEVERUD	SCREENING_POP	f	SNP				C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50881982					SNP	C	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943240 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1619 bp upstream
Cpgi5375	CpG island 5375	1760 bp distal
Cpgi5376	CpG island 5376	1422 bp proximal
H4c1	H4 clustered histone 1	1538 bp downstream
H4c2	H4 clustered histone 2	1848 bp downstream
Rr388131	regulatory region 388131	1399 bp downstream
Rr388132	regulatory region 388132	539 bp upstream
Rr475944	regulatory region 475944	1129 bp distal
Rr475945	regulatory region 475945	1963 bp proximal
Tssr121748	transcription start site region 121748	1628 bp upstream
Tssr121749	transcription start site region 121749	1910 bp downstream
Tssr121750	transcription start site region 121750	1952 bp downstream
Tssr121751	transcription start site region 121751	1966 bp downstream