rs50882045 SNP Detail

Summary

• ID
  rs50882045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77968797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATTTAT ATATTATACA
  TATATTTATA TGTTATGTAT TTATATAAGA AATATGTGTC TTACTTCTTT GTTTCCTGCT
  CATACCTGGA TAAAGCACAT ATGGTACAAG CTTAAGACTA GCATTTGAAA CAGATCTCTA
  GTTCCCCTGA GCCCAGGAAT CTGTTGCGTG AAGTCGAGAT GCTAATGCCT CCATATTTAA
  W
  GAGCTGTCTC TCTCAAACTG TATAATTTTG ATGTCTGCAC CAGGTCAATG AATCGGGGCT
  CAGCCTGTTC ATATGATTGA CTGGATTTCA GAGAATTTTA AAAGTGTGCT CTCTTCCTCC
  TTCCCTCCCT CCCTCCCTCC CTCCCTCTCT CCTCCTTTCC CCCCCATCTG CTATATGTGT
  GCGGTTGCCT GCAGAGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192720	NES17468874	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50882045					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192720	NES17468874	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77968797 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	1290 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541208	regulatory region 541208	1538 bp distal
Rr541209	regulatory region 541209	857 bp distal
Rr541210	regulatory region 541210	1925 bp proximal
Tssr152064	transcription start site region 152064	1573 bp downstream
Tssr152065	transcription start site region 152065	1556 bp downstream
Tssr152066	transcription start site region 152066	1091 bp upstream
Tssr152067	transcription start site region 152067	1123 bp upstream
Tssr152068	transcription start site region 152068	1153 bp upstream
Tssr152069	transcription start site region 152069	1254 bp upstream
Tssr152070	transcription start site region 152070	1369 bp upstream
Tssr152071	transcription start site region 152071	1400 bp upstream
Tssr152072	transcription start site region 152072	1421 bp upstream
Tssr152073	transcription start site region 152073	1454 bp upstream
Tssr152074	transcription start site region 152074	1483 bp upstream
Tssr152075	transcription start site region 152075	1503 bp upstream