rs50882222 SNP Detail

Summary

• ID
  rs50882222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT TTCCCTCCAT CGGGCCAACC
  Y
  CTCCCACCTC CCAAGGGCCC ACCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148668602	ENSMUSSNP4272792	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322132182	CHEV_7_30978117	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50882222					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892523 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	69 bp distal
Cpgi18782	CpG island 18782	689 bp proximal
Cpgi18783	CpG island 18783	1381 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	506 bp upstream
Rr400233	regulatory region 400233	1937 bp upstream
Rr644738	regulatory region 644738	within coordinates
Rr644739	regulatory region 644739	1940 bp proximal
Tssr65662	transcription start site region 65662	831 bp upstream
Tssr71696	transcription start site region 71696	168 bp upstream
Tssr71697	transcription start site region 71697	147 bp upstream
Tssr71698	transcription start site region 71698	116 bp upstream
Tssr71699	transcription start site region 71699	within coordinates
Tssr71700	transcription start site region 71700	22 bp downstream
Tssr71701	transcription start site region 71701	240 bp downstream
Tssr71702	transcription start site region 71702	696 bp downstream
Tssr71703	transcription start site region 71703	902 bp downstream
Tssr71704	transcription start site region 71704	996 bp downstream
Tssr71705	transcription start site region 71705	1054 bp downstream
Tssr71706	transcription start site region 71706	1922 bp downstream
Tssr71707	transcription start site region 71707	1934 bp downstream
Tssr71708	transcription start site region 71708	1948 bp downstream