rs50882457 SNP Detail

Summary

• ID
  rs50882457
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGTACTA TATGCTGCCA
  TTGCTTCCTG CTACAAGAAA CTCATTCCAG CTGACTTCTT CCATCGTCCT ACTCCCCGGC
  CTACCACGAC CCACGACAAA ATTCTATGCC CGTCTAATTT TCACAAGGCT CCACTTAGAG
  GCGAGGCGGG GTGTGGAGAT CCGATTTTCA GACTTTTGGT AACAGACAAA CAGGCTACTC
  K
  GCATCTGCAA AATAAAACCC TCGCTATAAT TATAATCTAA GACCCAATTC ACTTCCGCTC
  GCATCTCCCT ACCGACTCGA AACTTCCCTG AAGCTCTCAA AGGACCTATT TCTACCTGTC
  CCCCGGCTCC CATCTCGAGC CTGCATTATT TCCTGAAATG GGAAACCCGG ACATCGCTCC
  CCTCGCAAGA TGAAGACCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607050	ENSMUSSNP803076	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325524290	CHEV_18_10609360	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50882457					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	70 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	393 bp proximal
Rr533780	regulatory region 533780	737 bp proximal
Rr533781	regulatory region 533781	753 bp proximal
Rr533782	regulatory region 533782	1059 bp proximal
Tssr152429	transcription start site region 152429	686 bp downstream
Tssr152430	transcription start site region 152430	762 bp downstream
Tssr152431	transcription start site region 152431	907 bp downstream
Tssr152432	transcription start site region 152432	939 bp downstream
Tssr152433	transcription start site region 152433	984 bp downstream