rs50883290 SNP Detail

Summary

• ID
  rs50883290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GAGGTTATAC GTTATCTCTG
  S
  GTCTCCAGCA TTTCCCACCA ATAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758070	NES17350944	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50883290					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758070	NES17350944	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	320 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	655 bp upstream
Rr527794	regulatory region 527794	785 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	642 bp downstream
Tssr5137	transcription start site region 5137	801 bp downstream
Tssr144870	transcription start site region 144870	1341 bp downstream
Tssr144871	transcription start site region 144871	1307 bp downstream
Tssr144872	transcription start site region 144872	290 bp upstream
Tssr144873	transcription start site region 144873	846 bp upstream
Tssr144874	transcription start site region 144874	904 bp upstream
Tssr144875	transcription start site region 144875	1842 bp upstream
Tssr144876	transcription start site region 144876	1901 bp upstream
Tssr148364	transcription start site region 148364	1552 bp upstream
Tssr148365	transcription start site region 148365	1512 bp upstream
Tssr148366	transcription start site region 148366	1490 bp upstream
Tssr148367	transcription start site region 148367	592 bp downstream
Tssr148368	transcription start site region 148368	615 bp downstream
Tssr148369	transcription start site region 148369	630 bp downstream
Tssr148370	transcription start site region 148370	652 bp downstream
Tssr148371	transcription start site region 148371	713 bp downstream
Tssr148372	transcription start site region 148372	736 bp downstream
Tssr148373	transcription start site region 148373	1767 bp downstream
Tssr148374	transcription start site region 148374	1779 bp downstream