rs50883585 SNP Detail

Summary

• ID
  rs50883585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78356908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGTAAT CCTTCCTTTG
  GTGGCATCGG AAAGGGGCAT TTGATGAGAG AAGTGGATGC CTTGGATGGT CTGTGTTCCC
  GGATCTGTGA CCAGTCTGGT ATACATTACA AAGTGCTAAA CCGGCGTAAG GGCCCTGCTG
  TGTGGGGACT GAGAGCACAG ATTGACCGGA AACTTTATAA ACAGAACATG CAGGTGAGCA
  Y
  AGGCGAGGCC AGGGGTGAGC ACCCACGGTG AGGCCAGGAG GGACTGTGGG CTTCTCCAAC
  TGCTCTTTCA ACTGGCATTC TCTGTTGACA GAAAGAAATC CTGAGCACGC CCCTACTCAC
  TGTTCAGAAG GGAGCTGTAG AAGATCTAGT TCTTGCAGAA CCAGAGCCTG GGTACCCTGG
  GAAGTCCAGG GTCAGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61427210	NES16810882	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50883585					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427210	NES16810882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78356908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	702 bp distal
Gm17324	predicted gene, 17324	840 bp upstream
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	1289 bp downstream
Rr683554	regulatory region 683554	1408 bp distal
Rr683555	regulatory region 683555	350 bp distal
Tssr86287	transcription start site region 86287	1398 bp downstream