rs50883901 SNP Detail

Summary

• ID
  rs50883901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:71368882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCTCTG GAATTAAAGG
  AGTGTGCCAC CATCACCCAA CTTCAAATAC CTTTTCAGTG AAGAAAAAGG CATCAGACTT
  TATGGGTTAC TTGAGTTTAC CCAGCTTAGA AAAAGTAAGT ACTTAGCCAC AAAGACCTAT
  GTAGTCATTC TTCATTTGTA CATGGGGCCT TTCTGGTTCT CTGGTGGAGT TGGTTATTTT
  K
  TGTTTAACTG GTTTTTAGTG ACCAAAGGCA TTCTATAAGG CCTTAAGAAT AAGGTTTTTG
  ACATACCAAG ATATATATAT ATATATTTAA AATTTTTTTA GGTCAACAGT CTCAGAGATG
  TTTCTCTTAA TTTATCTACT TTGGAGTTCT CTGACATCAG GGATAAATTC AGATTCTGCA
  TCCATAGGGG GCCAGGCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52444343	NES15422751	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50883901					SNP	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52444343	NES15422751	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:71368882 () rs orientation: forward

Symbol	Name	Function Class
4930474H06Rik	RIKEN cDNA 4930474H06 gene	422 bp upstream
Rr267972	regulatory region 267972	319 bp proximal