rs50884262 SNP Detail

Summary

• ID
  rs50884262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GCAGGTCTGG AGCTCTAAGT
  Y
  ATAGTATCTT CATGCCTGCC CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147546847	ENSMUSSNP716734	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321352210	CHEV_4_134987849	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50884262					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1237 bp proximal
Gm15979	predicted gene 15979	1093 bp upstream
Gm69862	predicted gene, 69862	1995 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr43991	transcription start site region 43991	1810 bp downstream