rs50884629 SNP Detail

Summary

• ID
  rs50884629
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTGAAA TACTAACTAG
  ACCAGGAGTG AGATGATCTT GGGCAGAGGG CAGAAGAACA TGGTATCCAA GAGATTCTGA
  GGCCTTGTCT ATAAAGTCTG AGCGCCACTG GTCTTTCTTT TTAAAGTTCT CTTTCAACCT
  TATAGTGAGG AAATTCATCT TTCTTAAAAC TTGTCTGTAT TTATTTATCC ATTAGCATAA
  C
  TTTAGAGTAT ATGGATTCAA CCTGACTTTA TTATTATTTA GCATATTCTT TAATGTAGAG
  ATGGTAGATT TTTTTTTTTT TATTTAGGAA ATCGGCTAGC TTTTCGTTAA TTTATTTACA
  TTTTCTTTTT TTTTTATTTG CATGAGGTGG CTAGTTAACT TTATACAGTA TAGATATTTT
  AATGCTCTTC TTGCTCTAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147206139	ENSMUSSNP6616969	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50884629					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	960 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1139 bp upstream
Rr397176	regulatory region 397176	850 bp upstream
Rr562509	regulatory region 562509	649 bp proximal
Rr562510	regulatory region 562510	1150 bp proximal
Rr562511	regulatory region 562511	1255 bp proximal
Rr562512	regulatory region 562512	1294 bp proximal
Rr562513	regulatory region 562513	1682 bp proximal
Tssr19307	transcription start site region 19307	1063 bp upstream
Tssr19308	transcription start site region 19308	1088 bp upstream
Tssr19309	transcription start site region 19309	1131 bp upstream
Tssr19310	transcription start site region 19310	1171 bp upstream
Tssr19311	transcription start site region 19311	1215 bp upstream