rs50885239 SNP Detail

Summary

• ID
  rs50885239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61178131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGCA CATACGCACA
  CATCCATAGA AAGGATGGGA ACACACTTCT GAGGCCTCAT ATGGACCCCA TTAGACAATC
  CCCCTGCCCC CATTACGGAG TCAAGCTGCT TTTCCCCAGC CAGAGAAGAG GAAGAGAGAT
  CCGGTGCCCA GAGACATGGC CCCTCACCTC CTCCCGAGGG GCGCAGAAGT CTGGCACAGG
  R
  ATACGGCAGT AGGTAAGGCC AAGGCAGGCC CCCTGGTGCT GGCTGAAGAC CTCCTGTGTG
  GTCAGGCACT TCTGGAACCT GGGGGCAGTA GGGCTCTTGG TGTTGGGGAC AGGTGCGCTC
  AGGTGGGCCT TCAGCTGGGC CTCCAGAGCC TGGACAAGAG CGGAACAGAG GGCAGAGGCC
  ACTGAGACAG GCCAGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52341806	NES15289124	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50885239					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341806	NES15289124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61178131 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	131 bp distal
Rr215533	regulatory region 215533	1270 bp proximal
Rr223113	regulatory region 223113	1693 bp distal
Rr228160	regulatory region 228160	310 bp distal
Rr228161	regulatory region 228161	1480 bp proximal