rs50885899 SNP Detail

Summary

• ID
  rs50885899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102548841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAATCAGT ACAACAGTCA
  AAGAGCTGAG TTCATTTTCA AATCTCTGTG GTAGACCCCT TAAAAGTCAC ATAACCTGTG
  CCATAATGAC AATAGATGAT GAATTCATTG AAAAATATTG TCAATACTAA CAGATTTCTT
  CAGTTGTCTG GGTCTACTTT GACTCTGTTC ATATACAACT ATGGTCTGTG TGAACACATG
  W
  ATGCTTCAGG GAACTCTTCC GTGCTTCAAA ATTTTATATT TAATTTACTT ATTCTGTATC
  TTAAAACATG TAGTTTGAGG TGCTGGGAAG ATGGCTCTGT CACTAATGTT CTTTCTGTGA
  AAATGTAAGG ACCTAAATTC ATTTCTCCCG TCTGCATTTA TAAAAGCTGG GCATGGAGGT
  GTGTGTCTGA GGACTGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss61042890	NES16081813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs50885899					SNP	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61042890	NES16081813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102548841 () rs orientation: forward

Symbol	Name	Function Class
Or51a8	olfactory receptor family 51 subfamily A member 8	708 bp upstream