rs50886334 SNP Detail

Summary

• ID
  rs50886334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81033215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTACTTT TTTTTTTCAT
  TAGGTGTATA GATATTTTGC CTGCATTTTT GTCTGTGTAC CACATGTGTG CAGTACCCAC
  AGGGGCCGGA AAGATGTCCT CTGGAGCTGG AATTACAAGT GCATGTGAGC CACCCTGAGG
  GTGTTGGAGA CTGATTCCCG TCCTCTGCAA GAGCAGCCAC TGAGCCATCC TTCCAGCCCC
  W
  AGTTCATTCT TTATTCTATG AATCATGTCT ACGGTGCCTG AGTGGCCAGG CTCTGGCTGC
  CTTGAAGTCA TCTCCCTTAT GTCCCTGTCT CATGCTGAAC TATTTTGGGG GACGTGACCA
  GCAGATGAGT CTGGCCACAG TTGTGCCTGG GACAAAGGCC TGGGTTTGGC AAGCATAAAC
  CCTGTTCCAG TCCTGTGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388364	NES15266878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50886334					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388364	NES15266878	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81033215 () rs orientation: forward

Symbol	Name	Function Class
Atcayos	ataxia, cerebellar, Cayman type, opposite strand	within coordinates
Nmrk2	nicotinamide riboside kinase 2	789 bp downstream
Rr435554	regulatory region 435554	880 bp proximal
Rr435555	regulatory region 435555	1010 bp proximal
Rr435556	regulatory region 435556	1742 bp proximal