rs50887032 SNP Detail

Summary

• ID
  rs50887032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGGTC TCACTGTGTG
  GCTCTGGAGG GACTGGAATT CACTGTGTAG ACCAGGCTGG CTTAAATTTG TAATGCAAAT
  TCTGCCTCCC ACGTGCTGGT GTTGAAGACA CGTGGCCCAG TGCCCAGCTA GGAGATTATG
  TTTTAAAGTT TTTAATCCAG TGATACAAAT GGATTTTTAA AGCTTTTTAT TTGGAAACAG
  Y
  TTCAAAATTA TTAAATGATA GGAAAAATAG AACCAATAGG AGCTTCCTGC CTTGACTCTC
  CCGTCCTAGT ATTTTCCAAT AAAGCAACAT ATATTCTAAT ATACAGATCT TGTTTGAAGC
  GGGTAGGGTA GACCTGGGAG AATTTAGGAA AGAAATGGGG AGAATATGAC CAAAGTACAC
  ATGCACAAAA TTCCCATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135206875	ENSMUSSNP6488542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320783064	CHEV_3_58308167	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50887032					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411666 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	896 bp upstream
Rr375034	regulatory region 375034	within coordinates
Rr577238	regulatory region 577238	305 bp distal