rs50887355 SNP Detail

Summary

• ID
  rs50887355
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28664893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTGGA CAGACACACA
  CACACACAAT CTCTCAAAAT ATATATATAT ACACATACAC ATTCATGCAG AAAATGACAA
  GATGTTTCAC ATCAACAGTG ACCAGTTAAA GGGAAAGAAG CACTGTAAGA GATTCCGGTT
  CCTACCCATC AGAATGGATA TCATGGGAAA ATAAGAGTGT ACGTGTTGGG GATTCGACGG
  W
  AATTGCTCAG TGTCAGAGCA CAAGCTGAAC ATGTGAGGAC CCGAGTTTGT AGCCCAGTAC
  AGTGGTGCAT GCTGGGTGAG GGTAGCATGG GCTGACACAG AAGGATCTCA GGGGCTTGCT
  GGCCAGACAG TCTAGAGTTG GTGCAGGATT GGAGAGATGG CTTAGAAAGT AAAAGCGCTT
  GCTACACATG CCTGAAATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561164	NES16570512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50887355					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561164	NES16570512	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28664893 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	within coordinates
Gm22146	predicted gene, 22146	76 bp upstream
Gm55779	predicted gene, 55779	942 bp upstream
Rr524560	regulatory region 524560	345 bp proximal
Rr524561	regulatory region 524561	592 bp proximal