rs50888330 SNP Detail

Summary

• ID
  rs50888330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78870800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGTGCC TGGGCACACC
  TGTGAGGGAT TTTTCTTAAT TAAATTATTT GAGGTAGGAA GACACCCCTT TAATCCAAAA
  CTGTGAGGTG GGGAGAGCCA CCCTTAATTT GGGTCATACC TTCTGCTGGC AGTGTATATA
  AAGGACATGG AAGAAGGAAG CTTTTGTTCT TGGCCTGTTT GTTCTAGCTG TCAAGCCCAT
  K
  CCATCACTGG AATTAGAGCT ATTTCTTCAA GATCCTGGTA TATATGGAAG ACTAACTGAA
  ACACCTAGCC TTTTGGACTA AGCAAATACT GAATTCTTCG ACTTTCCATT CGTAGAGAGC
  GGTAGTTGGA TTAACTGGAG TCTAGCCTGT AAGCCGCCCT AACAGATGTC TAACAAATTA
  ATATATACAT TTATTCTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421447	NES15923001	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50888330					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421447	NES15923001	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78870800 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	1961 bp downstream
Rr578452	regulatory region 578452	903 bp proximal