rs50888447 SNP Detail

Summary

• ID
  rs50888447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCAGGG AGGTGGATTT
  GCAGCAGGGA GGGTGTGGTC TGAGTGGAGA GACCACCTCC TACCACCCTT CAGTGTCCAG
  AGAACTCAGC CAGCCCTGGG AGCCCTCCTG CACCCCTTCA TCTAAGAAGG GAGTGGAAGA
  CCCCAGGGAG AAGCCACAGG ACATTCTTCA TGGTGGGCTC TGTTGGGACA AGTCTCATAG
  R
  CAGCTCTAAG CTCTCCTGTA TTCCCACTAC AAAGGCTGAG AGATCAGTTC TTCAATTACC
  AGTCTCCTCT GGAGCTAAGA GTGGAGGGTC TCTTCCTGCC TAAGGTGCCC CGCCCATGGT
  GCCATGCCGC CCAGTAAATA AAGCCCCATC TGAATAACGG ATTGAAAAAC TTACCGAGAG
  TTGCTGAAGA AGTCAGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002545	NES16125152	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50888447					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002545	NES16125152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1899 bp proximal
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1073 bp downstream
Rr368318	regulatory region 368318	1689 bp upstream
Rr368319	regulatory region 368319	1909 bp upstream
Rr400324	regulatory region 400324	123 bp upstream
Rr646608	regulatory region 646608	1592 bp distal
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	984 bp proximal
Tssr2257	transcription start site region 2257	1773 bp downstream
Tssr72489	transcription start site region 72489	1708 bp upstream
Tssr72490	transcription start site region 72490	874 bp upstream
Tssr72491	transcription start site region 72491	646 bp upstream
Tssr72492	transcription start site region 72492	431 bp upstream
Tssr72493	transcription start site region 72493	399 bp upstream
Tssr72494	transcription start site region 72494	389 bp upstream
Tssr72495	transcription start site region 72495	373 bp upstream
Tssr72496	transcription start site region 72496	287 bp upstream
Tssr72497	transcription start site region 72497	184 bp upstream
Tssr72498	transcription start site region 72498	44 bp downstream
Tssr72499	transcription start site region 72499	194 bp downstream
Tssr72500	transcription start site region 72500	351 bp downstream