rs50888794 SNP Detail

Summary

• ID
  rs50888794
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4027659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATGCATTCTG ATTGTTGCCA CTGCAACTAC AACAGTAAAT
  GCCTCTGCCA TAACCCCTGC CCTCTCACAG TTTATCTAGT AAAGCAGTGT AGAGATAATA
  M
  CAATACACAG CGAATTCAAA ATTTTAGAAT TATGGGAGGC ACTAGGAAGG AAAATTAAAG
  AAGTAATATT TGATGTGAGA TACTGAAGAA GAGGCTCCTC A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147038950	ENSMUSSNP6133601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50888794					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4027659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	1884 bp distal
Gm2093	predicted gene 2093	within coordinates
Rr369897	regulatory region 369897	1225 bp downstream
Rr498630	regulatory region 498630	1336 bp distal