rs50889109 SNP Detail

Summary

• ID
  rs50889109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113612858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGTGTG AACTTATGCT
  GTGCTTGTAT TTGCTATAAA GTGTATCTTT GCTAATGTTT TGAATAGGAG ACTAAATATT
  TTTAAATAAA TACCAAGGAA ATAAATCCAC AGGAAATGTG GTTTCCTGTG AAGGTTGTTG
  AAGGAGAGCG ATTGGGAAGA AGGGAGACCA AGGAGAGACT AGGAGAGCAC AGCAGGAAAG
  S
  GAGGCTTGCA GCAAGGTGAA GGTTAAAGCA AGCCCTTGCC CGTCTCCCAG CCCAGCCTCG
  GCCTAAGCCT TTGGAGGTTC CCCTTTCTCC TGCCCTCTCG TGGCTCCTGG AGATTCTTGT
  ATGTTCCAGT GGTCGGTCTC AGTTGCTGCT GCTGCTCAGT GCTGCTGTGT GTGCCTCCCT
  TCCTTGCTCT GTGTTTTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61225220	NES16842759	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50889109					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225220	NES16842759	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113612858 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr192898	regulatory region 192898	1858 bp distal
Rr192899	regulatory region 192899	within coordinates
Rr202689	regulatory region 202689	905 bp distal
Rr207498	regulatory region 207498	within coordinates