rs50889262 SNP Detail

Summary

• ID
  rs50889262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73421364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAAGCT TCGTCTCATG
  GCGGAGGGGA ATAGTGAGAA AGAACAAACT AAACTCAATA CAAGGGAAAT AAGAGTGGAA
  ACCAATAAAA TTGAAAACAG GAAAGAAAAA AAAACCCAAC AGAGAAAGAT TAATAACAGG
  AAAACCTGGT TCTCTGAGAA GCCCAATAAA ATGGGTAAGT GTCACAGACA GGAGGAAAGT
  R
  TCCTGACTTT GCCTGCAGAC CAAGAGTTGT ATCTTAGACT GAACCGTGGC TGCAGTCTGT
  GCTTGACCTT AATGCCACCC AATCTGACTG CAGCGGCCTC CAGTGGCCTC CCCAGAGTTA
  AGGGGAGAAA AGTTGGGAGC CCTTTGGCAC CTTTTCTTCT GCAATGGCGT CCTTCTGGCC
  TGAACTGTGG GCAGCAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
ss61644181	NES17584888	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
rs50889262					SNP	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61644181	NES17584888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73421364 () rs orientation: forward

Symbol	Name	Function Class
D830013O20Rik	RIKEN cDNA D830013O20 gene	within coordinates
Rr257323	regulatory region 257323	37 bp proximal
Rr261220	regulatory region 261220	1237 bp proximal
Rr264130	regulatory region 264130	58 bp proximal