rs50890313 SNP Detail

Summary

• ID
  rs50890313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72893207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTACCTTC GGGCGCAGCG
  CCGGGAGGCT TTCTCCTGGT GGATGCCTTG GTCCTCGGGC GACCTCGGGC GGAGGGCGCG
  ACCTGGCAGG TGTTAGGCGC GGGCTCGCAG GCTGCAGCCC CGCGAGCTCG GAGCTGGGCG
  CCCCGGGATT CAGGTGCAGC TGCATCCGTA TGCTGAGATG CCGCGTGCGT CACTCTGAGC
  Y
  GGCTCGGAGG TCCCAGGTGT CAGGAATAGA AAAGTGTGCA CCCCAGAAGT ATACTCCTAT
  TCAGCCCCGA AGCCTGTTCT CCGCCCGTTC TTCACGCTTC CCCTCCGGGT CCTTACCAGC
  GTTTGTTAGG CTGACGGCTT GTCCTAAGTA GCAGCTGCGC GTGTGTCGTT TGTGTTTACC
  TCTCATTTAT CCCAACTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420827	NES16804896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50890313					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420827	NES16804896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72893207 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	within coordinates
Cpgi22024	CpG island 22024	within coordinates
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	549 bp upstream
Rr401512	regulatory region 401512	303 bp downstream
Rr682884	regulatory region 682884	567 bp distal
Rr682885	regulatory region 682885	310 bp distal
Rr682886	regulatory region 682886	within coordinates
Rr682887	regulatory region 682887	124 bp distal
Tssr2935	transcription start site region 2935	610 bp upstream
Tssr86066	transcription start site region 86066	519 bp downstream
Tssr86067	transcription start site region 86067	501 bp downstream
Tssr86068	transcription start site region 86068	358 bp downstream
Tssr86069	transcription start site region 86069	283 bp downstream
Tssr90501	transcription start site region 90501	628 bp upstream
Tssr90502	transcription start site region 90502	583 bp upstream
Tssr90503	transcription start site region 90503	528 bp upstream