rs50890862 SNP Detail

Summary

• ID
  rs50890862
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAAAAAATTA AACAATCCCT
  S
  AGAGTTGCTA CAATTATGCT ATCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136408162	ENSMUSSNP5403098	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322942707	CHEV_9_45070643	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50890862					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173858 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1270 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	761 bp distal
Tssr89253	transcription start site region 89253	329 bp downstream
Tssr89254	transcription start site region 89254	396 bp downstream
Tssr89255	transcription start site region 89255	486 bp downstream
Tssr89256	transcription start site region 89256	510 bp downstream
Tssr89257	transcription start site region 89257	1616 bp downstream
Tssr89258	transcription start site region 89258	1657 bp downstream
Tssr89259	transcription start site region 89259	1680 bp downstream