rs50891501 SNP Detail

Summary

• ID
  rs50891501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16726888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATGTGC TTTGGTGTTT
  TGATGTATAT CAGTGGGGGG GGGGTGTTAA ATCCCCTAGA GGTGGGGTTA CAGACATTTA
  TGAGCATTAT GTGGGTGCTG GGAATTGAAC CCAGGTCCTC TGAAAGAGCA GCCTGTGCTT
  TTAACCATGG AGCCATTTCT CCAACTCCAA GAAAATATTT TACTTTAAAA ACGTGTTTAT
  Y
  GGGCTGGGCA TGGTGGCGCA CGCCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGTGGA
  TCTCTGAGTT CGAGGCCAGC CTGGTCTACA AAGTGAGTTC TAGGACAGCC AAGGCTACAC
  AGAGAAACCC TGTCTCGAAA AACAAACAAA CAAACAAACA AACAAACAAA ACCCGTGTTT
  ATCGTGTGTG AATTAATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148402133	ENSMUSSNP17215	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50891501					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16726888 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	mRNA-UTR
Cpgi18410	CpG island 18410	1028 bp proximal
Rr642838	regulatory region 642838	245 bp distal
Tssr64672	transcription start site region 64672	835 bp upstream
Tssr64673	transcription start site region 64673	902 bp upstream
Tssr64674	transcription start site region 64674	1014 bp upstream