rs50891597 SNP Detail

Summary

• ID
  rs50891597
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47721177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGTTCACTT CCAAGATGGA AAACTCATCA GATTCAGCAT
  CGACTTCACC TGATGCTCCT CAGCCCAGTG AGAATCCACC ATCACCACCG ACTTCACCTG
  C
  CGCTCCTCAG ACCAGTGAGA ATCCACCATC ACCACCGACT TCACCTGCCG TTCCTCAGAC
  CAGGGAGAAT CCACCATCAC CACCGACTTC ACCTGCCGCT C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146469466	ENSMUSSNP3626483	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50891597					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47721177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	617 bp distal
Gm58934	predicted gene, 58934	1179 bp upstream
Rr370527	regulatory region 370527	1464 bp downstream
Rr406020	regulatory region 406020	499 bp downstream
Rr549123	regulatory region 549123	1190 bp distal
Rr549124	regulatory region 549124	1520 bp distal
Rr549125	regulatory region 549125	1379 bp distal
Rr549126	regulatory region 549126	1251 bp distal
Rr549127	regulatory region 549127	1046 bp distal
Rr549128	regulatory region 549128	255 bp distal
Sfr1	SWI5 dependent recombination repair 1	within coordinates
Tssr156884	transcription start site region 156884	970 bp downstream
Tssr156885	transcription start site region 156885	941 bp downstream
Tssr156886	transcription start site region 156886	207 bp upstream
Tssr156887	transcription start site region 156887	914 bp upstream