rs50892528 SNP Detail

Summary

• ID
  rs50892528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGGAT GTAGTTCGGT
  TGGTAGAGTG CTTACGCAGC ATGCAGAAAA CCCTGGCCCC GAGCCCCAGA GACGTATTAA
  TAAAACAGCG CAGGCTAGAC ACCACTGAGG CCTGTAATCG CAGGAGGGCG GAAGCAGGAG
  AATCAGAAGT TCAAGGTCAT CCTTGGCTAC ATGGCAAGTT CAAGGCTAGC CTGGCCTTGC
  Y
  TCAAAAAACA AAGCCAGAAT AAATGACCCT GGTGGAAGCC TCTATTCTTT CCAAGGAGGT
  GTCTGTCTAT CCCTTGAAGT GAGACTGATC ACCTTCAGTG GTTTTCACAG TGACTTTGTC
  TTCCTTCTTG GCTCACTAGT CCCTAAACCC TCCTTCCCAC CTGGCCCTTT AAGAGCAGCT
  GCTGCGACCG TACCCGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148400012	ENSMUSSNP6757874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50892528					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	90 bp proximal
Cpgi18407	CpG island 18407	1896 bp proximal
Gm71929	predicted gene, 71929	928 bp downstream
Pnma8b	PNMA family member 8B	318 bp upstream
Rr368243	regulatory region 368243	92 bp upstream
Rr642821	regulatory region 642821	995 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	241 bp proximal
Rr642824	regulatory region 642824	1279 bp proximal
Tssr64660	transcription start site region 64660	281 bp upstream
Tssr64661	transcription start site region 64661	1330 bp upstream
Tssr70792	transcription start site region 70792	1285 bp downstream