rs50892577 SNP Detail

Summary

• ID
  rs50892577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCAAGG GGACCGTGTC
  CTAAGTGCCG TCAGGAGGGA CATTGGGCTG TCGATAGCCC TCGTGTTGCA CAGAACAGAG
  GGACATCCGG TCCAGGTACT CCTCCAGCTG ACCGCCTAGG CTTGGCTATG GGTGACCTAA
  GGGGCCGGAG CTCCTTCGAC CCAGCCACGC CCATCACTAG CAGGGAGCCC AGGTAGCTAT
  Y
  ATGGTGTTTG GGCGCCCCAT CTCCTTCCTC TTGGACACCA GGGCCACTTA CTCAGTCCTG
  ACAGTTTTGG GGACCCACTT CACCTTGGAA TGGGGCCAAG GGTTTCAGAG GTGGAGTTTT
  CTATTGTCCG GGTAGGAGGA CAACCTTATC TTCCTCATCA GACCCCACCA CTTAGTTGCA
  TTTTTAGGGG TGTACCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136668122	ENSMUSSNP6517120	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323016438	CHEV_9_78371255	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50892577					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430730 () rs orientation: forward

Symbol	Name	Function Class
Gm47430	predicted gene, 47430	1291 bp downstream
Gm69163	predicted gene, 69163	1571 bp upstream
Rr206776	regulatory region 206776	1329 bp distal
Rr383643	regulatory region 383643	995 bp upstream