rs50893435 SNP Detail

Summary

• ID
  rs50893435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185319419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGATGATG TCTCACTGAT
  GACATAGTTC TTGAAGCTTT CTTTCACCAT AAAAGCTTCA AGATTTATTA TTCTTCTTGG
  CATAAGTACA TCAATAAATA AACTTAAAAT CACAGAATGT CTTTGATTAG GTTTTTTTTT
  TGCATATCAA AGTGACAATA GATAGCCTCA TAACTCAGCC TGAATCTTAT GCAATCGATG
  R
  TTTTCCCTGA ATCTCACTTT CTTTACTTAG AGATTTTAGC GAACACACAT ATAATGAATG
  CTCAATAGTG GGCATTTGAA GGTCAGTCCG AGTGAGGGTG GTTGATTAAA GTTTTTGTTG
  AGCATCCATC TCTCTAAGTT ATATTGGACA GCAGATAGAA AGATGCCCTG TACTGTTGTT
  TATGCTTGCT TAGTACTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146436990	ENSMUSSNP5074019	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320177560	CHEV_1_187411101	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50893435					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185319419 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1833 bp distal
Rr425415	regulatory region 425415	424 bp proximal