rs50894256 SNP Detail

Summary

• ID
  rs50894256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115873512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACATGGAGGA GCAGCCAAGG CTCCCCAGGC CTAGCCCAGA
  ATCAGCATGA GGATCCTGAG ATGGTACCAC CAAGGAATAA CCAAAGAACC TGTGCTCGCT
  M
  AGGTAGAGGT GGCAGGTATG GGATCCGAGC CTCCCAAACT AGGAGGTGCC AGCTCCAAAC
  ACTGCCTGGG TAGGCTGGAA CCAAGGGACT TTTATTTCAA T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147277431	ENSMUSSNP6971038	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50894256					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115873512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	873 bp proximal
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	503 bp downstream
Tssr38489	transcription start site region 38489	950 bp upstream
Tssr42842	transcription start site region 42842	1341 bp downstream
Tssr42843	transcription start site region 42843	1539 bp downstream
Tssr42844	transcription start site region 42844	1708 bp downstream
Tssr42845	transcription start site region 42845	1727 bp downstream
Tssr42846	transcription start site region 42846	1772 bp downstream
Tssr42847	transcription start site region 42847	1805 bp downstream
Tssr42848	transcription start site region 42848	1821 bp downstream
Tssr42849	transcription start site region 42849	1838 bp downstream