rs50894384 SNP Detail

Summary

• ID
  rs50894384
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24909897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT ACTTTGTGTG ATCTGTTGTT
  T
  ATTCTTCAGA GGAAAGTGTA GCTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145361363	ENSMUSSNP1475106	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325333044	CHEV_17_24827868	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50894384					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24909897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8738	CpG island 8738	684 bp distal
Rr339325	regulatory region 339325	within coordinates
Syngr3	synaptogyrin 3	974 bp upstream
Tssr146762	transcription start site region 146762	1036 bp upstream
Tssr146763	transcription start site region 146763	963 bp upstream