rs50895470 SNP Detail

Summary

• ID
  rs50895470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGCCTTA CCCGATCCCA
  GGCGTCAAGC TCGACCTCTT AAGAAGTGTG CTGCAGCAGC GTCTGGTTGC ACTGGGAACT
  GCTCTCGCAA CCCGAATCTC AGCGTAGAAC GAATGCCTCC CCTCACTTAG CTTACAAACA
  AGGCCTCTCC AAAAATCATG TCTTGGTGTG ACGGCAGTTT TATTCTTACG CATTTTCACC
  R
  ATGTGGGCGG TTAATATAGG CTACCAAAGA AAAGTTTAGC CGGGCATAGT GACACACATT
  TTTAATCTCA AGACTCGGAA AGCAGGCTCT GAGTTACAGG CTAGCCGTTT GTTACATAGT
  CGAGGGGCTT AATATCCATC CATGTGGGGC CAAGAAGAGG CCAGGAGGGC TTTTCTTAAG
  TAGTCACAAA GCTAGGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394051	NES16775933	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50895470					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394051	NES16775933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407315 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	43 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	716 bp upstream
Rr195326	regulatory region 195326	686 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	497 bp downstream
Tssr2862	transcription start site region 2862	117 bp upstream
Tssr84988	transcription start site region 84988	958 bp downstream
Tssr84989	transcription start site region 84989	900 bp downstream
Tssr84990	transcription start site region 84990	795 bp downstream
Tssr84991	transcription start site region 84991	749 bp downstream
Tssr84992	transcription start site region 84992	615 bp downstream
Tssr84993	transcription start site region 84993	564 bp downstream
Tssr84994	transcription start site region 84994	105 bp downstream
Tssr89390	transcription start site region 89390	1607 bp upstream
Tssr89391	transcription start site region 89391	1588 bp upstream
Tssr89392	transcription start site region 89392	1558 bp upstream
Tssr89393	transcription start site region 89393	1026 bp upstream
Tssr89394	transcription start site region 89394	742 bp upstream
Tssr89395	transcription start site region 89395	697 bp upstream
Tssr89396	transcription start site region 89396	680 bp upstream