rs50896064 SNP Detail

Summary

• ID
  rs50896064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82222565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAGAAAG AGGAGGGCTG
  GGGCTTCCTC GCCACAGTCC TCCCCTGCAA AGCCACCTGA GTAGGTGAGG GTACCTGTCT
  TCTGCAACAT TGCCTTGGAG TCAAATCTCA GGACCCACTC GAATCTGCTC TTAGCAGCTT
  TATATGCTGA ACTGTGGAAG ATAACAGATG TTATGTATCC CACCGGGCAT AGTGGGACCC
  R
  CCTTTAATCT CAGCACTCAG GAGGTAGAAG CAGGAGGATC TCTGAGTTCT GGGCCAGCCT
  GGTCCACATA GCCAGTTTCA GGCCAGCCAG GGCTACTAGG TAGAGAGACC CTATCTCCGA
  AAATAAAAGT TACGGATTCC ACATTTGGTC CCAAGTCGCT TTCACTACCC TCACACACTC
  CTTCCCTACC CTTTACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148231427	ENSMUSSNP2536530	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50896064					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82222565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	287 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	583 bp upstream
Rr506479	regulatory region 506479	408 bp proximal
Rr506480	regulatory region 506480	606 bp proximal
Rr506481	regulatory region 506481	740 bp proximal
Tssr4669	transcription start site region 4669	500 bp downstream
Tssr135542	transcription start site region 135542	1344 bp upstream
Tssr135543	transcription start site region 135543	406 bp downstream
Tssr135544	transcription start site region 135544	437 bp downstream
Tssr135545	transcription start site region 135545	493 bp downstream