rs50896151 SNP Detail

Summary

• ID
  rs50896151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25208885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATATTA TTATTATATT
  AGCAAGTGGG TGTGAGGTTC TGACTAGTTT AGAAAGTAGA CATTTCCTAC ACCTCATATT
  GTTAAGAATA ATAATGAGAT AGATTTGTAG TCCTTTTTTT TTTCTTTCTT AATATCAATG
  TAATTTTTTA TTCTGTGTCC AATATGGGAT GGTTTAACAG TAATTTTTGA CAACCAATTT
  K
  ACTAATATAT ACATAGTACA TTATTCTTAA AATTTCACCC AAAAAGCAGT TATTTATCAC
  ATGCTTTGGT AATACTGTTT GAGTAATAAT TTTCTGGATA ATTATTGCTT GGCTGGTAAG
  AGTTAATATA GATAATTTTT TGTTAATATG TTGAATATTA TAAATTATTA TTGAATTGTG
  AGTACTGTAG AGATGTGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136234470	ENSMUSSNP7002759	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50896151					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25208885 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	213 bp upstream
Tssr84137	transcription start site region 84137	238 bp upstream
Tssr84138	transcription start site region 84138	286 bp upstream
Tssr84139	transcription start site region 84139	1891 bp upstream